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Changelog

This project adheres to Semantic Versioning and Keep a Changelog format.

[0.9.0] -- 2025-01-03

Added:

  • Added a new class CreateBEDsetRequest in bedhost/data_models.py to handle BEDset creation requests.
  • Introduced a new API endpoint /v1/bed/{bed_id}/neighbours to get nearest neighbors for a BED record in bedhost/routers/bed_api.py.
  • Implemented a new API endpoint /v1/bedset/create/ to create a new BEDset by providing a registry path to the PEPhub project in bedhost/routers/bedset_api.py.

Changed:

  • Refactored text_to_bed_search function to include additional logic for handling specific queries in bedhost/routers/bed_api.py.

UI improvements:

  • Added Most similar files table to bed page
  • Improved Mobile friendly ui to both bed and bedset page
  • Improved metadata tables on bed page
  • Added Download pdf button for plots
  • Improved search tables
  • Added creation of bedset UI

[0.8.0] -- 2024-11-07

Added:

  • Added endpoint showing available genomes
  • Added endpoint listing bed_ids with missing plots

[0.7.0] -- 2024-10-23

Added:

  • New text2bed search (bivec search)
  • Added track_hub endpoints and pointing link
  • Added pep generating endpoint for bedsets

[0.6.0] -- 2024-10-15

[0.6.0] -- 2024-10-15

[0.6.0] -- 2024-10-15

  • Multiple ui improvements and fixes
  • Updated bed metadata endpoint: added annotation to metadata return model, with standard schema
  • Updated metadata in search endpoints.
  • Added embed endpoint. #136

[0.5.0] -- 2024-06-11

  • Improved Bed search (speed and quality)
  • Added licenses
  • UI tweaks
  • Added universes and bed tokens to the database
  • Added embedding endpoint

[0.4.0] -- 2024-04-08

  • Support of new bbconf.
  • Updated endpoints.

[0.3.0] -- 2023-03-01

  • switch to pydantic2
  • updated requirements
  • updated docs

[0.2.0] -- 2023-10-17

  • remove all graphql
  • remove local static hosting of UI
  • update to new pipestat-based bbconf (pending)
  • major refactor of API that introduces backwards-incompatible changes

[0.1.3] -- 2023-09-01

  • allow all origins

[0.1.2] -- 2023-02-06

change

  • change /bedset/my_bedset/file_pathsendpoint from GET to POST

[0.1.1] -- 2021-10-30

change

  • /bed/genomes and bedset/genomes: improve speed

[0.1.0] -- 2021-10-25

add

  • GraphQL endpoints

change

  • endpoints update due to bbconf and pipestat changes

[0.0.6] -- 2021-05-17

add

  • Add endpoints that serve:
  • a list of genome assemblies in bedsets and bedfiles table
  • bed files by search term(s)
  • remote file path (http / s3)

[0.0.5] -- 2021-04-15

add

  • Add examples of API endpoints

fix

  • resolve /about page not found when typing/editing url in the address bar.

[0.0.4] -- 2021-04-01

add

  • add endpoint for region-based query

fix

  • constrauction of local file/img path

[0.0.3] -- 2021-02-22

  • Initial project release