Running Bedboss in Docker

To run bedboss in docker, go through the following steps:

Clone the bedboss repository:

git clone git@github.com:databio/bedboss.git

Go to the bedboss directory.
Build the docker image:
Terminal window
```
docker build -t my_bedboss .
```
source the environment variables:
Terminal window
```
source production/production.env
```

Run the docker container with setting limit of the files that have to be processed:

docker run --rm -it \
    --env POSTGRES_DB=$POSTGRES_DB \
    --env POSTGRES_HOST=$POSTGRES_HOST \
    --env POSTGRES_USER=$POSTGRES_USER \
    --env POSTGRES_PASSWORD=$POSTGRES_PASSWORD \
    --env QDRANT_API_KEY=$QDRANT_API_KEY \
    --env QDRANT_API_HOST=$QDRANT_API_HOST \
    --env AWS_ACCESS_KEY_ID=$AWS_ACCESS_KEY_ID \
    --env AWS_SECRET_ACCESS_KEY=$AWS_SECRET_ACCESS_KEY \
    --env AWS_ENDPOINT_URL=$AWS_ENDPOINT_URL \
    --env UPLOAD_LIMIT=1 \
    -t my_bedboss

If everything is set up correctly, you should see the bedboss prompt.