Changelog
This project adheres to Semantic Versioning and Keep a Changelog format.
[0.5.0] - 2025-01-16
Added
- Added open_chromatin plot back into processing.
- Added gtrs dependency, that calculates gc content.
- Added skipper that automatically skips samples in pep that were already processed.
- Added lite functionality to main functions that allows to run uploading without using any heavy processing.
- Added function that will reprocess files, if they were unprocessed in the bedbase.
- Added function that predicts genome if genome wasn't provided.
Fixes
- Important speed improvements.
- Improved requirements checker.
- Minor bug fixes.
[0.4.1] - 2024-09-20
Added
- Standardization of peps using bedbase bedms schema
- Reference validator module
Fixed
- Pipeline failures (due to pipeline manager)
- Failure in cleaning temp files
[0.4.0] - 2024-08-26
Added
- Added bbuploader (GEO uploader)
[0.3.0] - 2024-08-21
Added
- Added classifier
- Added create universe uploader
- Added tokenization and token uploader
Changes
- Updated efficiency of CLI help
[0.2.1] - 2024-04-09
Changed
- small naming tweaks
Added
- added requirement check to cli
[0.2.0] - 2024-04-08
Changed
- moved all uploading functionality to the
bbconf
package
Added
- added commands for indexing bedfiles
- added commands for deleting bedfiles and bedsets
[0.1.0] - 2024-01-26
Added
- Initial alpha release