Changelog
This project adheres to Semantic Versioning and Keep a Changelog format.
[0.3.0] -- 2024-04-04
- Added S3 uploading to bbclient
- Added and cleaned tests
- Added bed2bed search interface
[0.2.0] -- 2024-02-20
- Fixed a bug with pydantic
- Integrate
lightning
for easier training of models with SLURM and the DDP framework - New datasets for streaming
.gtok
files to models - New tutorials for updated ScEmbed
- Start working on
Atacformer
[0.1.0] -- 2023-12-18
- First official released version of geniml
- Integrated bedshift 1.1.1 into geniml (excluding intersection support)
[bedshift 1.1.1] - 2021-04-15
- Updated documentation
- Fixed dependencies packaging for building documentation
[bedshift 1.1.0] - 2021-04-02
- Added ability to specify chrom sizes file, or refgenie genome.
- Add perturbation will create regions proportional to chromosome size
- Improve performance of perturbations
- Add --dropfile, --addfile, and --shiftfile options
- Add --add_valid option
- Add --yaml-config option
- Improved testing framework
- Improved logging messages
[bedshift 1.0.0] - 2020-05-20
- Add, shift, drop, cut, and merge perturbations.
- Basic documentation
- Basic tests