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BEDbase: a unified platform for genomic regions
API documentation
Initializing search
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BEDbase
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BEDbase: a unified platform for genomic regions
Home
BEDbase
BEDbase
UI guide
UI guide
Public BEDbase instance
API guides
API guides
BEDhost API guide
BEDhost API guide
Developer Guide
Build image
Deploy API
Changelog
BBConf
BBConf
Configuring
Overview
Guide
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Reference
Reference
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Usage
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Contributing
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BEDboss
BEDboss
Tutorials
Tutorials
BEDboss run-pep
BEDboss-all pipeline
BEDmaker tutorial
BEDqc tutorial
BEDstat tutorial
BEDbuncher tutorial
BEDindex tutorial
BEDclassifier tutorial
How to guides
How to guides
Create BEDbase database
Configuring
Install dependencies
Reference
Reference
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Usage
Changelog
Geniml
Geniml
Getting Started
Getting Started
Module overviews
How-to guides
How-to guides
Cache BED files with BBClient
Tokenization
Tokenize a BED file with CLI
Train region2vec embeddings
Train BEDspace model
Train BEDspace model
Train BEDSpace embeddings
BEDspace results notebook
Use scEmbed model
Use scEmbed model
Train single-cell embeddings
Populate a vector store
Predict cell-types using KNN
Evaluate embeddings
Create consensus peaks with CLI
Create consensus peaks with Python
Assess universe fit
Fine-tune embeddings
Randomize bed files
Create evaluation dataset with bedshift
Create search backend
Reference
Reference
Manuscripts
Manuscripts
Rymuza2024
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API documentation
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Contributing
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Genimtools
Genimtools
Genimtools
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geniml
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Version Information:
geniml
v0.0.1-dev, generated by
lucidoc
v0.4.3
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