How to install R dependencies
Before running any of the pipelines, you need to install the required R dependencies.
To do so, you can run the following command:
bedboss install-requirementsHow to install genomic interval region conversion tools
Section titled “How to install genomic interval region conversion tools”- bedToBigBed: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed
- bigBedToBed: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed
- bigWigToBedGraph: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph
- wigToBigWig: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig