gtars Modules

gtars is organized as a workspace of independent Rust crates, each providing specific functionality for genomic interval analysis. All modules share common dependencies and infrastructure through gtars-core.

Core Infrastructure

• gtars-core - Fundamental data structures and utilities
• gtars-io - I/O operations and file format parsers

Genomic Analysis

• gtars-overlaprs - High-performance interval overlap operations
• gtars-uniwig - Coverage computation from BED/BAM files
• gtars-igd - Fast genomic interval search
• gtars-scoring - Fragment overlap scoring
• gtars-fragsplit - Fragment file splitting for pseudobulk

Machine Learning

• gtars-tokenizers - Genomic region tokenizers for ML

Data Access

• gtars-refget - GA4GH refget protocol implementation
• gtars-bbcache - BED file caching for bedbase.org

Language Bindings

• gtars-python - Python API bindings
• gtars-wasm - WebAssembly bindings
• gtars-cli - Command-line interface