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How to install R dependencies

Before running any of the pipelines, you need to install the required R dependencies.

To do so, you can run the following command: 

bedboss install-requirements

How to install genomic interval region conversion tools:

  • bedToBigBed: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed
  • bigBedToBed: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed
  • bigWigToBedGraph: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph
  • wigToBigWig: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig