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How to install R dependencies

  1. Install bedboss
  2. Install R:
  3. Download this script: installRdeps.R
  4. Install dependencies by running this command in your terminal: Rscript installRdeps.R
  5. Run bedboss check-requirements to check if everything was installed correctly.

How to install regionset conversion tools:

  • bedToBigBed:
  • bigBedToBed:
  • bigWigToBedGraph:
  • wigToBigWig: