Skip to content

Changelog

This project adheres to Semantic Versioning and Keep a Changelog format.

[0.2.0] -- 2024-02-20

  • Fixed a bug with pydantic
  • Integrate lightning for easier training of models with SLURM and the DDP framework
  • New datasets for streaming .gtok files to models
  • New tutorials for updated ScEmbed
  • Start working on Atacformer

[0.1.0] -- 2023-12-18

  • First official released version of geniml
  • Integrated bedshift 1.1.1 into geniml (excluding intersection support)

[bedshift 1.1.1] - 2021-04-15

  • Updated documentation
  • Fixed dependencies packaging for building documentation

[bedshift 1.1.0] - 2021-04-02

  • Added ability to specify chrom sizes file, or refgenie genome.
  • Add perturbation will create regions proportional to chromosome size
  • Improve performance of perturbations
  • Add --dropfile, --addfile, and --shiftfile options
  • Add --add_valid option
  • Add --yaml-config option
  • Improved testing framework
  • Improved logging messages

[bedshift 1.0.0] - 2020-05-20

  • Add, shift, drop, cut, and merge perturbations.
  • Basic documentation
  • Basic tests